Statistics


Island database statistics


Species
(assembly)
Average CGI length +/- SDAverage CGI O/E ratio +/- SDAverage CGI %G+C +/- SDNr. of genes with overlapping CGIsAverage nr. of CGIs overlapping the gene body +/- SDAverage nr. of CGIs overlapping R13 region +/- SDAverage nr. of CGIs overlapping R8 region +/- SD
Homo sapiens
(hg19)
202.674 ± 184.1660.930 ± 0.2740.663 ± 0.075133,2891.676 ± 1.9401.368 ± 0.8541.360 ± 0.827
Pan troglodytes
(panTro3)
195.418 ± 170.1430.932 ± 0.2800.663 ± 0.07618,5314.750 ± 6.0512.243 ± 1.2961.697 ± 1.074
Gorilla gorilla
(gorGor3)
185.929 ± 157.5721.017 ± 0.4080.657 ± 0.08223,5783.573 ± 5.471.849 ± 1.2131.468 ± 0.909
Pongo abelii
(ponAbe2)
239.681 ± 202.8280.878 ± 0.2750.646 ± 0.07219,5114.056 ± 5.4901.973 ± 1.1481.611 ± 0.972
Macaca mulatta
(rheMac2)
190.543 ± 142.5750.943 ± 0.2420.648 ± 0.07331,9083.573 ± 5.4711.849 ± 1.2131.468 ± 0.909
Mus musculus
(mm10)
198.290 ± 197.7331.068 ± 0.4320.649 ± 0.10062,8771.720 ± 1.7731.306 ± 0.7101.245 ± 0.623
Rattus norvegicus
(rn4)
186.132 ± 189.6251.170 ± 0.4770.657 ± 0.11426,0222.450 ± 2.6061.504 ± 0.8621.286 ± 0.654

CGI: CpG island; Gene body defined as TSS-500 bp to TES+500 bp; R13: Promotor region defined as TSS-1500 bp to TSS+500 bp; R8: 3' end region defined as TES to TES+500 bp

 


Island statistics on orthologous genes of animal species, as compared to hg19 assembly (12605 genes)


Species
(Assembly)
Nr. of orthologous genesAverage nr. of CGIs in the orthologous gene +/- SD Nr. of orthologous genes with CGIsNr. of overlapping CGIsPercentage of overlapping CGIsCGI coverage (overlapping bp fraction)
Pan troglodytes
(panTro3)
11,8385.981 ± 9.20710,532125,49379.420.8
Gorilla gorilla
(gorGor3)
11,9505.522 ± 7.28210,345111,39377.020.77
Pongo abelii
(ponAbe2)
11,5335.407 ± 7.8989,81198,41664.670.62
Macaca mulatta
(rheMac2)
11,6616.820 ± 8.81610,42878,82164.960.68
Mus musculus
(mm10)
11,5344.415 ± 4.91510,47537,60258.250.61
Rattus norvegicus
(rn4)
11,3493.659 ± 3.8709,83333,90255.180.58