NGSmethDB browser NGSmethDB: A database for NGS single-cytosine-resolution DNA methylation data

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Data updated: July 07, 2011

- Overview
Ideogram
- Details
Ruler
RefSeq Genes
CGI Median Strict Set
H1 CGs
IMR90 CGs
H9eb CGs
BGO2eb CGs
H9endoderm CGs
liver CGs
liver11 CGs

The methylation values of the cytosines are displayed by a color gradient from white (methylation value = 0, unmethylated in all reads) to red (methylation value = 1, methylated in all reads). Cytosines covered by at least one read are shown.

Data submissions to NGSmethDB are encouraged, please contact us.

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- Tracks
- Genes
   
RefSeq Genes   
- Methylation Data
- Colon
   
HCT116 CGs HCT116 CWGs  
- Embryoid Bodies
   
H9eb CGs BGO2eb CGs  
H9eb CWGs BGO2eb CWGs  
- Embryonic Stem Cells
   
H1 CGs WA09 CWGs H9esc CGs
H1 CWGs BGO2esc CGs H9esc CWGs
WA09 CGs BGO2esc CWGs  
- Endoderm
   
H9endoderm CGs H9endoderm CWGs  
- Fibroblasts
   
WA09fibro CGs fibro CGs IMR90 CGs
WA09fibro CWGs fibro CWGs IMR90 CWGs
- Liver
   
liver CGs liver24 CGs H9noafp CGs
liver CWGs liver24 CWGs H9noafp CWGs
liver11 CGs H9afp CGs  
liver11 CWGs H9afp CWGs  
- Regulatory Domains
- CpGcluster Islands
   
CGI Median CGI Chromosome Intersection CGI Genomic Intersection
CGI Median Strict Set CGI Chromosome Intersection Strict Set CGI Genomic Intersection Strict Set
- TFBSs
   
TFBSs CisRed TFBSs Conserved  
- TJ Islands
   
CGI Takai-Jones   
- Sequence Features
   
DNA/GC Content   
- Variation
   
gt'd SNPs/20Kb gt'd SNPs/500Kb dbSNP SNPs
- Overview
   
Ideogram   

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Computational Genomics and Bioinformatics Group, Dept. of Genetics & Inst. of Biotechnology, University of Granada, Spain