NGSmethDB browser NGSmethDB: A database for NGS single-cytosine-resolution DNA methylation data

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Data updated: July 07, 2011

- Overview
Ideogram
- Details
Ruler
RefSeq Genes
CGI Genomic Intersection Strict Set
H1 CGs
WA09 CGs
fibro CGs
PBMC CGs

The methylation values of the cytosines are displayed by a color gradient from white (methylation value = 0, unmethylated in all reads) to red (methylation value = 1, methylated in all reads). Cytosines covered by at least one read are shown.

Data submissions to NGSmethDB are encouraged, please contact us.

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- Tracks
- Genes
   
RefSeq Genes   
- Methylation Data
- Blood
   
PBMC CGs PBMC CWGs  
- Breast
   
MDAMB231 CGs MDAMB231 CWGs  
- Embryonic Stem Cells
   
H1 CGs WA09 CGs  
H1 CWGs WA09 CWGs  
- Fibroblasts
   
WA09fibro CGs fibro CWGs CHPSKN1 CGs
WA09fibro CWGs IMR90 CGs CHPSKN1 CWGs
fibro CGs IMR90 CWGs  
- Regulatory Domains
- CpGcluster Islands
   
CGI Genomic Intersection CGI Genomic Intersection Strict Set  
- TFBSs
   
TFBSs Conserved   
- TJ Islands
   
CGI Takai-Jones   
- Sequence Features
   
DNA/GC Content   
- Variations and Repeats
- Repeat Masker
   
Repeat Masker   
- Simple variation
   
All SNPs(132) SNVs WA09fibro CWGs SNVs PBMC CWGs
SNVs H1 CGs SNVs fibro CGs SNVs CHPSKN1 CGs
SNVs H1 CWGs SNVs fibro CWGs SNVs CHPSKN1 CWGs
SNVs WA09 CGs SNVs IMR90 CGs SNVs MDAMB231 CGs
SNVs WA09 CWGs SNVs IMR90 CWGs SNVs MDAMB231 CWGs
SNVs WA09fibro CGs SNVs PBMC CGs  
- Overview
   
Ideogram   

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Computational Genomics and Bioinformatics Group, Dept. of Genetics & Inst. of Biotechnology, University of Granada, Spain