Publications

Oliver JL, Carpena P, Hackenberg M, Bernaola-Galván P. 2004.
IsoFinder: computational prediction of isochores in genome sequences.
Nucleic Acids Research 32: W287-W292 [PDF]
http://dx.doi.org/10.1093/nar/gkh399

Pedro Bernaola-Galván, José L. Oliver, Michael Hackenberg, Ana V. Coronado, Plamen Ch. Ivanov, and Pedro Carpena. 2012.
Segmentation of time series with long-range fractal correlations
The European Physical Journal B 85: 211 [PDF]
http://dx.doi.org/10.1140/epjb/e2012-20969-5

Oliver JL, Bernaola-Galván P, Hackenberg M, Carpena P. 2008.
Phylogenetic distribution of large-scale genome patchiness.
BMC Evolutionary Biology 8: 107
http://dx.doi.org/10.1186/1471-2148-8-107

Bernaola-Galván P, Román-Roldán R, Oliver JL. 1996.
Compositional segmentation and long-range fractal correlations in DNA sequences.
Physical Review E 53: 5181-5189 [PDF]

Pedro Carpena, José L. Oliver, Michael Hackenberg, Ana V. Coronado, Guillermo Barturen and Pedro Bernaola-Galván. 2011.
High-level organization of isochores into gigantic superstructures in the human genome
Physical Review E 83: 031908 (1-7)

http://dx.doi.org/10.1103/PhysRevE.83.031908

Bernaola-Galván P, Carpena P, Oliver JL. 2008.
A standalone version of IsoFinder for the computational prediction of isochores in genome sequences.
arXiv:0806.1292v1 [q-bio.GN] [PDF]

Carpena P, Bernaola-Galván P, Coronado AV, Hackenberg M, Oliver JL. 2007.
Identifying characteristic scales in the human genome.
Physical Review E 75: 032903 [PDF]

Li W, Bernaola-Galván P, Carpena P, Oliver JL. 2003.
Isochores merit the prefix ‘iso’.
Computational Biology and Chemistry 27: 5-10 [PDF]

Oliver JL, Carpena P, Román-Roldán R, Mata-Balaguer T, Mejías-Romero A, Hackenberg M, Bernaola-Galván P. 2002.
Isochore chromosome maps of the human genome.
Gene 300: 117-127 [PDF]

Grosse I, Bernaola-Galván P, Carpena P, Román-Roldán R, Oliver J, Stanley HE. 2002.
Analysis of symbolic sequences using the Jensen-Shannon divergence.
Physical Review E 65: 041905 [PDF]

Oliver JL, Bernaola-Galván P, Carpena P, Román-Roldán R. 2001.
Isochore chromosome maps of eukaryotic genomes.
Gene 276: 47-56 [PDF]

Bernaola-Galván P, Carpena P, Román-Roldán R, Oliver JL. 2001.
Mapping isochores by entropic segmentation of long genome sequences.
RECOMB Proceedings of the Fifth Annual International Conference on Computational Biology, Montreal, Canada. [PDF]

Oliver JL, Román-Roldán R, Pérez J, Bernaola-Galván P. 1999.
SEGMENT: identifying compositional domains in DNA sequences.
Bioinformatics 15: 974-979 [PDF]