{"id":1257,"date":"2015-06-04T18:34:42","date_gmt":"2015-06-04T16:34:42","guid":{"rendered":"http:\/\/bioinfo2.ugr.es\/NGSmethDB\/?page_id=1257"},"modified":"2019-07-08T18:56:18","modified_gmt":"2019-07-08T16:56:18","slug":"differential-methylation","status":"publish","type":"page","link":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/differential-methylation\/","title":{"rendered":"Differentially methylated cytosines (DMCs)"},"content":{"rendered":"<h4 class=\"entry-title post-title\" style=\"text-align: right;\">{{How to cite NGSmethDB}}<\/h4>\n<p>Track hubs at UCSC Genome Browser:<\/p>\n<ul>\n<li><strong>Human &#8211; hg38<\/strong>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTracks?hgS_doLoadUrl=submit&amp;hgS_loadUrlName=http%3A%2F%2Fbioinfo2.ugr.es%2FDMCdb_hub%2Fhg38%2FGRIN2D_testicle_dmcs\" target=\"_blank\" rel=\"noopener noreferrer\">Genome map of DMCs at UCSC<\/a>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTables?hgsid=500070727_00ZinsQsozvaASri2o59xP5v1HR2&amp;clade=mammal&amp;org=Human&amp;db=hg38&amp;hgta_group=hub_95443&amp;hgta_track=knownGene&amp;hgta_table=0&amp;hgta_regionType=range&amp;position=chr9%3A133252000-133280861&amp;hgta_outputType=primaryTable\" target=\"_blank\" rel=\"noopener noreferrer\">Table browser<\/a><\/li>\n<\/ul>\n<\/li>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTracks?hgS_doLoadUrl=submit&amp;hgS_loadUrlName=http%3A%2F%2Fbioinfo2.ugr.es%2FclassDMC_hub%2Fhg38%2Fclass_session\" target=\"_blank\" rel=\"noopener noreferrer\">Intra- and interindividual DMCs<\/a>.<\/li>\n<\/ul>\n<\/li>\n<li><strong>Tomato &#8211; <\/strong><strong><em>Solanum lycopersicum<\/em> &#8211; sly2_50<\/strong>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTracks?hgS_doLoadUrl=submit&amp;hgS_loadUrlName=http%3A%2F%2Fbioinfo2.ugr.es%2FDMCdb_hub%2Fsly2_50%2Fdmcs_sly2_50_giovanoni\" target=\"_blank\" rel=\"noopener noreferrer\">Genome map of DMCs at UCSC<\/a>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTables?hgsid=511190141_NiW0luY7lmIR1VcdYwmeV9ppBa1K&amp;clade=hub_98183&amp;org=hub_98183_Solanum+lycopersicum&amp;db=hub_98183_sly2_50&amp;hgta_group=meth&amp;hgta_track=hub_98183_Gene_models&amp;hgta_table=0&amp;hgta_regionType=genome&amp;position=ch02%3A38625135-54290517&amp;hgta_outputType=primaryTable\" target=\"_blank\" rel=\"noopener noreferrer\">Table Browser<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<li><strong>Tomato &#8211; <\/strong><strong><strong><em>Solanum pimpinellifolium<\/em><\/strong><\/strong>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTracks?hgS_doLoadUrl=submit&amp;hgS_loadUrlName=http%3A%2F%2Fbioinfo2.ugr.es%2FDMCdb_hub%2Fsly2_50%2Fdmcs_sly2_50\" target=\"_blank\" rel=\"noopener noreferrer\">Genome map of DMCs at UCSC<\/a>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTables?hgsid=511190211_rExuahVDa0U8adDwtDz2X64rThZn&amp;clade=hub_98183&amp;org=hub_98183_Solanum+lycopersicum&amp;db=hub_98183_sly2_50&amp;hgta_group=meth&amp;hgta_track=hub_98183_Gene_models&amp;hgta_table=0&amp;hgta_regionType=genome&amp;position=ch02%3A38625135-54290517&amp;hgta_outputType=primaryTable\" target=\"_blank\" rel=\"noopener noreferrer\">Table Browser<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<p>[[How to cite NGSmethDB]]<\/p>\n<ul>\n<li>Geisen et al. (2014) Nucleic Acids Res, 42, D53-9. <a href=\"http:\/\/nar.oxfordjournals.org\/content\/42\/D1\/D53.full\" target=\"_blank\" rel=\"noopener noreferrer\">Free Full Text<\/a><\/li>\n<li>Hackenberg et al. (2011) Nucleic Acids Res, 39, D75-9. <a href=\"http:\/\/nar.oxfordjournals.org\/content\/39\/suppl_1\/D75.full\" target=\"_blank\" rel=\"noopener noreferrer\">Free Full Text<\/a><\/li>\n<\/ul>\n<p>[[How to cite NGSmethDB]]<\/p>\n","protected":false},"excerpt":{"rendered":"<p>{{How to cite NGSmethDB}} Track hubs at UCSC Genome Browser: Human &#8211; hg38 Genome map of DMCs at UCSC Table browser Intra- and interindividual DMCs. Tomato &#8211; Solanum lycopersicum &#8211; sly2_50 Genome map of DMCs at UCSC Table Browser Tomato<span class=\"ellipsis\">&hellip;<\/span><\/p>\n<div class=\"read-more\"><a href=\"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/differential-methylation\/\">Read more &#8250;<\/a><\/div>\n<p><!-- end of .read-more --><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/wp-json\/wp\/v2\/pages\/1257"}],"collection":[{"href":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/wp-json\/wp\/v2\/comments?post=1257"}],"version-history":[{"count":5,"href":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/wp-json\/wp\/v2\/pages\/1257\/revisions"}],"predecessor-version":[{"id":2412,"href":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/wp-json\/wp\/v2\/pages\/1257\/revisions\/2412"}],"wp:attachment":[{"href":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/wp-json\/wp\/v2\/media?parent=1257"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}