{"id":1460,"date":"2016-02-19T15:10:18","date_gmt":"2016-02-19T13:10:18","guid":{"rendered":"http:\/\/bioinfo2.ugr.es\/NGSmethDB\/?page_id=1460"},"modified":"2019-07-08T18:54:59","modified_gmt":"2019-07-08T16:54:59","slug":"single-cytosine-methylation","status":"publish","type":"page","link":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/single-cytosine-methylation\/","title":{"rendered":"Single-cytosine methylation"},"content":{"rendered":"<h4 class=\"entry-title post-title\" style=\"text-align: right;\">{{How to cite NGSmethDB}}<\/h4>\n<p>Track hubs at UCSC Genome Browser:<\/p>\n<ul>\n<li><strong>Human &#8211; hg38<\/strong>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTracks?db=hg38&amp;hubUrl=http:\/\/bioinfo2.ugr.es\/NGSmethDB_hub\/hg38\/hub.txt&amp;hgS_loadUrlName=http:\/\/bioinfo2.ugr.es\/NGSmethDB_hub\/hg38\/ATG4C_1K2DA_meth&amp;hgS_doLoadUrl=submit\" target=\"_blank\" rel=\"noopener noreferrer\">Genome map at UCSC<\/a>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTables?hgsid=500071493_9deEshe5NWkafdAHLQn9qrsEvAeE\" target=\"_blank\" rel=\"noopener noreferrer\">Table Browser<\/a><\/li>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgIntegrator?hgsid=500071723_VJFRSOawkanUvKunAuBDn3TBzSPO\" target=\"_blank\" rel=\"noopener noreferrer\">Data Integrator<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<li><strong>Human &#8211; hg19<\/strong>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTracks?db=hg19&amp;hubUrl=http:\/\/bioinfo2.ugr.es\/NGSmethDB_hub\/hg19\/hub.txt&amp;hgS_loadUrlName=http:\/\/bioinfo2.ugr.es\/NGSmethDB_hub\/hg19\/NGSmethDB_hg19_session&amp;hgS_doLoadUrl=submit\" target=\"_blank\" rel=\"noopener noreferrer\">Genome map at UCSC<\/a>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTables?hgsid=477872219_PrhaLJ1E4no1hdF5sVHiazeeRjMt&amp;clade=mammal&amp;org=Human&amp;db=hg19&amp;hgta_group=hub_11125&amp;hgta_track=hub_11125_bcell_2_cg&amp;hgta_table=0&amp;hgta_regionType=range&amp;position=chr21%3A33973223-33986429&amp;hgta_outputType=wigData&amp;hgta_outFileName=\" target=\"_blank\" rel=\"noopener noreferrer\">Table Browser<\/a><\/li>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgIntegrator?hgsid=500072129_asKa8EWcXvPTKy9uqrzMjAcnnyUA\" target=\"_blank\" rel=\"noopener noreferrer\">Data Integrator<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<li><strong>Chimp &#8211; panTro4<\/strong>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTracks?db=panTro4&amp;hubUrl=http:\/\/bioinfo2.ugr.es\/NGSmethDB_hub\/panTro4\/hub.txt&amp;hgS_loadUrlName=http:\/\/bioinfo2.ugr.es\/NGSmethDB_hub\/panTro4\/meth_panTro4_session&amp;hgS_doLoadUrl=submit\" target=\"_blank\" rel=\"noopener noreferrer\">Genome map at UCSC<\/a>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTables?hgsid=511189321_mk9Mbq3B1IJcVMb161qMm84cMlRm&amp;clade=mammal&amp;org=Chimp&amp;db=panTro4&amp;hgta_group=hub_11209&amp;hgta_track=genscan&amp;hgta_table=0&amp;hgta_regionType=range&amp;position=chr3%3A132858155-132868826&amp;hgta_outputType=primaryTable\" target=\"_blank\" rel=\"noopener noreferrer\">Table Browser<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<li><strong>Rhesus &#8211; rheMac3<\/strong>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTracks?db=rheMac3&amp;hubUrl=http:\/\/bioinfo2.ugr.es\/NGSmethDB_hub\/rheMac3\/hub.txt&amp;hgS_loadUrlName=http:\/\/bioinfo2.ugr.es\/NGSmethDB_hub\/rheMac3\/methHubSession.txt&amp;hgS_doLoadUrl=submit\" target=\"_blank\" rel=\"noopener noreferrer\">Genome map at UCSC<\/a>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTables?hgsid=511189393_gQnrAGDNWUylbAuBN2jgesLTNuEJ&amp;clade=mammal&amp;org=Rhesus&amp;db=rheMac3&amp;hgta_group=hub_11127&amp;hgta_track=xenoRefGene&amp;hgta_table=0&amp;hgta_regionType=genome&amp;position=chr14%3A70031481-70048503&amp;hgta_outputType=primaryTable\" target=\"_blank\" rel=\"noopener noreferrer\">Table Browser<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<li><strong>Mouse &#8211; mm10<\/strong>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTracks?db=mm10&amp;hubUrl=http:\/\/bioinfo2.ugr.es\/NGSmethDB_hub\/mm10\/hub.txt&amp;hgS_loadUrlName=http:\/\/bioinfo2.ugr.es\/NGSmethDB_hub\/mm10\/methHubSession.txt&amp;hgS_doLoadUrl=submit\" target=\"_blank\" rel=\"noopener noreferrer\">Genome map at UCSC<\/a>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTables?hgsid=511189609_uYEd4ZjsYqMEAxfqxtMIE9YLq2d4&amp;clade=mammal&amp;org=Mouse&amp;db=mm10&amp;hgta_group=hub_11213&amp;hgta_track=xenoRefGene&amp;hgta_table=0&amp;hgta_regionType=genome&amp;position=chr12%3A56694853-56712395&amp;hgta_outputType=primaryTable\" target=\"_blank\" rel=\"noopener noreferrer\">Table Browser<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<li><strong>Tomato &#8211; <em>Solanum lycopersicum<\/em> &#8211; sly2_50<\/strong>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTracks?hgS_doLoadUrl=submit&amp;hgS_loadUrlName=http%3A%2F%2Fbioinfo2.ugr.es%2FNGSmethDB_hub%2Fsly2_50%2Fsesion_meth\" target=\"_blank\" rel=\"noopener noreferrer\">Genome map at UCSC<\/a>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTables?hgsid=511189815_kA7zrBWK21HOk50LhSbmyD3uU0Sc&amp;clade=hub_97009&amp;org=hub_97009_Solanum+lycopersicum&amp;db=hub_97009_sly2_50&amp;hgta_group=meth&amp;hgta_track=hub_97009_Gene_models&amp;hgta_table=0&amp;hgta_regionType=genome&amp;position=ch01%3A1-303000&amp;hgta_outputType=primaryTable\" target=\"_blank\" rel=\"noopener noreferrer\">Table Browser<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<li><strong>Tomato &#8211; <em>Solanum pimpinellifolium<\/em><\/strong>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTracks?hgS_doLoadUrl=submit&amp;hgS_loadUrlName=http%3A%2F%2Fbioinfo2.ugr.es%2FNGSmethDB_hub%2Fsly2_50%2Fsesion_meth_to937\" target=\"_blank\" rel=\"noopener noreferrer\">Genome map at UCSC<\/a>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTables?hgsid=511189923_9Y4oCdQ3aRTWKA08bZ8CnzduObPV&amp;clade=hub_97009&amp;org=hub_97009_Solanum+lycopersicum&amp;db=hub_97009_sly2_50&amp;hgta_group=meth&amp;hgta_track=hub_97009_Gene_models&amp;hgta_table=0&amp;hgta_regionType=genome&amp;position=ch01%3A1-303000&amp;hgta_outputType=primaryTable\" target=\"_blank\" rel=\"noopener noreferrer\">Table Browser<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<p>[[How to cite NGSmethDB]]<\/p>\n<ul>\n<li>Geisen et al. (2014) Nucleic Acids Res, 42, D53-9. <a href=\"http:\/\/nar.oxfordjournals.org\/content\/42\/D1\/D53.full\" target=\"_blank\" rel=\"noopener noreferrer\">Free Full Text<\/a><\/li>\n<li>Hackenberg et al. (2011) Nucleic Acids Res, 39, D75-9. <a href=\"http:\/\/nar.oxfordjournals.org\/content\/39\/suppl_1\/D75.full\" target=\"_blank\" rel=\"noopener noreferrer\">Free Full Text<\/a><\/li>\n<\/ul>\n<p>[[How to cite NGSmethDB]]<\/p>\n","protected":false},"excerpt":{"rendered":"<p>{{How to cite NGSmethDB}} Track hubs at UCSC Genome Browser: Human &#8211; hg38 Genome map at UCSC Table Browser Data Integrator Human &#8211; hg19 Genome map at UCSC Table Browser Data Integrator Chimp &#8211; panTro4 Genome map at UCSC Table<span class=\"ellipsis\">&hellip;<\/span><\/p>\n<div class=\"read-more\"><a href=\"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/single-cytosine-methylation\/\">Read more &#8250;<\/a><\/div>\n<p><!-- end of .read-more --><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/wp-json\/wp\/v2\/pages\/1460"}],"collection":[{"href":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/wp-json\/wp\/v2\/comments?post=1460"}],"version-history":[{"count":5,"href":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/wp-json\/wp\/v2\/pages\/1460\/revisions"}],"predecessor-version":[{"id":2411,"href":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/wp-json\/wp\/v2\/pages\/1460\/revisions\/2411"}],"wp:attachment":[{"href":"https:\/\/bioinfo2.ugr.es\/NGSmethDB\/wp-json\/wp\/v2\/media?parent=1460"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}