{"id":9,"date":"2013-06-05T18:36:21","date_gmt":"2013-06-05T16:36:21","guid":{"rendered":"http:\/\/bioinfo2.ugr.es\/ceUGR\/?page_id=9"},"modified":"2018-05-23T17:57:45","modified_gmt":"2018-05-23T15:57:45","slug":"software","status":"publish","type":"page","link":"https:\/\/bioinfo2.ugr.es\/ceUGR\/software\/","title":{"rendered":"Software"},"content":{"rendered":"<ul>\n<li>GenomeCluster\n<ul>\n<li><a href=\"http:\/\/bioinfo2.ugr.es\/GenomeCluster\/\" target=\"_blank\">Website<\/a><\/li>\n<li><a href=\"https:\/\/github.com\/bioinfoUGR\/genomecluster\" target=\"_blank\">GitHub repository<\/a><\/li>\n<li>Publication:<a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S1476927114000905\" target=\"_blank\">Computational Biology and Chemistry<\/a><\/li>\n<\/ul>\n<\/li>\n<li>MethylExtract\n<ul>\n<li><a title=\"MethylExtract\" href=\"http:\/\/bioinfo2.ugr.es\/MethylExtract\/\" target=\"_blank\">Website<\/a><\/li>\n<li><a href=\"https:\/\/github.com\/bioinfoUGR\/methylextract\" target=\"_blank\">GitHub repository<\/a><\/li>\n<li><a title=\"MethylExtract\" href=\"http:\/\/sourceforge.net\/projects\/methylextract\/\" target=\"_blank\">Sourceforge repository<\/a><\/li>\n<li>Publication:<a href=\"http:\/\/dx.doi.org\/10.12688\/f1000research.2-217.v2\" target=\"_blank\">F1000 Research<\/a><\/li>\n<\/ul>\n<\/li>\n<li>NGSmethPipe\n<ul>\n<li><a href=\"http:\/\/bioinfo2.ugr.es\/NGSmethPipe\/index.html\" target=\"_blank\">Website<\/a><\/li>\n<li><a href=\"http:\/\/bioinfo2.ugr.es\/NGSmethPipe\/downloads\/NGSmethPipe.tgz\" target=\"_blank\">Zipped archive<\/a><\/li>\n<li>Publication: <a href=\"http:\/\/www.intechopen.com\/download\/pdf\/32798\" target=\"_blank\">DNA Methylation \u2013 From Genomics to Technology<\/a><\/li>\n<\/ul>\n<\/li>\n<li>sRNAbench\n<ul>\n<li><a href=\"http:\/\/bioinfo5.ugr.es\/sRNAbench\/sRNAbench.php\" target=\"_blank\">Webserver<\/a><\/li>\n<\/ul>\n<\/li>\n<li>miRanalyzer\n<ul>\n<li><a href=\"http:\/\/bioinfo5.ugr.es\/miRanalyzer_dev\/miRanalyzer.php\" target=\"_blank\">Webserver<\/a><\/li>\n<li>Publication: <a href=\"http:\/\/nar.oxfordjournals.org\/content\/39\/suppl_2\/W132.long\" target=\"_blank\">Nucleic Acids Research<\/a><\/li>\n<\/ul>\n<\/li>\n<li>\u00a0WordCluster\n<ul>\n<li><a href=\"http:\/\/bioinfo2.ugr.es\/wordCluster\/wordCluster.php\" target=\"_blank\">Webserver<\/a><\/li>\n<li>Publication: <a href=\"http:\/\/dx.doi.org\/10.1186\/1748-7188-6-2\" target=\"_blank\">Algorithms for Molecular Biology<\/a><\/li>\n<\/ul>\n<\/li>\n<li>CpGcluster\n<ul>\n<li><a href=\"https:\/\/github.com\/bioinfoUGR\/cpgcluster\" target=\"_blank\">GitHub repository<\/a><\/li>\n<li>Publication: <a href=\"http:\/\/dx.doi.org\/10.1186\/1471-2105-7-446\" target=\"_blank\">BMC Bioinformatics<\/a><\/li>\n<\/ul>\n<\/li>\n<li>IsoFinder\n<ul>\n<li><a href=\"http:\/\/bioinfo2.ugr.es\/isochores\" target=\"_blank\">Website<\/a><\/li>\n<li><a href=\"https:\/\/github.com\/bioinfoUGR\/isofinder\" target=\"_blank\">GitHub repository<\/a><\/li>\n<li>Publication: <a href=\"http:\/\/dx.doi.org\/10.1093\/nar\/gkh399\" target=\"_blank\">Nucleic Acids Research<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Segment\n<ul>\n<li><a href=\"http:\/\/bioinfo2.ugr.es\/segment\/segment.zip\">Zipped archive<\/a><\/li>\n<li><a href=\"https:\/\/github.com\/bioinfoUGR\/segment\" target=\"_blank\">GitHub repository<\/a><\/li>\n<li>Publication: <a href=\"http:\/\/bioinformatics.oxfordjournals.org\/content\/15\/12\/974\" target=\"_blank\">Bioinformatics<\/a><\/li>\n<\/ul>\n<\/li>\n<li>SDSE\n<ul>\n<li><a href=\"http:\/\/bioinfo2.ugr.es\/soft\/sdse.rar\">Zipped archive<\/a><\/li>\n<li><a href=\"https:\/\/github.com\/bioinfoUGR\/sdse\" target=\"_blank\">GitHub repository<\/a><\/li>\n<li>Publication: <a title=\"Computer applications in the biosciences : CABIOS.\" href=\"http:\/\/bioinfo2.ugr.es\/Publicaciones\/sdse89.pdf\" target=\"_blank\">Comput Appl Biosci: CABIOS<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Drift\n<ul>\n<li><a href=\"http:\/\/bioinfo2.ugr.es\/soft\/drift.zip\" target=\"_blank\">Zipped archive<\/a><\/li>\n<li>Publication: <a href=\"http:\/\/bioinfo2.ugr.es\/Publicaciones\/drift_90.pdf\" target=\"_blank\">Pr\u00e1cticas de Gen\u00e9tica<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>GenomeCluster Website GitHub repository Publication:Computational Biology and Chemistry MethylExtract Website GitHub repository Sourceforge repository Publication:F1000 Research NGSmethPipe Website Zipped archive Publication: DNA Methylation \u2013 From Genomics to Technology sRNAbench Webserver miRanalyzer Webserver Publication: Nucleic Acids Research \u00a0WordCluster Webserver Publication: Algorithms &hellip;<\/p>\n<p class=\"read-more\"> <a class=\"more-link\" href=\"https:\/\/bioinfo2.ugr.es\/ceUGR\/software\/\"> <span class=\"screen-reader-text\">Software<\/span> Read More &raquo;<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":45,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/bioinfo2.ugr.es\/ceUGR\/wp-json\/wp\/v2\/pages\/9"}],"collection":[{"href":"https:\/\/bioinfo2.ugr.es\/ceUGR\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/bioinfo2.ugr.es\/ceUGR\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/bioinfo2.ugr.es\/ceUGR\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/bioinfo2.ugr.es\/ceUGR\/wp-json\/wp\/v2\/comments?post=9"}],"version-history":[{"count":5,"href":"https:\/\/bioinfo2.ugr.es\/ceUGR\/wp-json\/wp\/v2\/pages\/9\/revisions"}],"predecessor-version":[{"id":1029,"href":"https:\/\/bioinfo2.ugr.es\/ceUGR\/wp-json\/wp\/v2\/pages\/9\/revisions\/1029"}],"wp:attachment":[{"href":"https:\/\/bioinfo2.ugr.es\/ceUGR\/wp-json\/wp\/v2\/media?parent=9"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}