{"id":1965,"date":"2014-09-02T11:45:16","date_gmt":"2014-09-02T09:45:16","guid":{"rendered":"http:\/\/bioinfo2.ugr.es\/genomica\/?page_id=1965"},"modified":"2015-10-04T18:08:22","modified_gmt":"2015-10-04T16:08:22","slug":"alineamientos","status":"publish","type":"page","link":"https:\/\/bioinfo2.ugr.es\/genomica\/alineamientos\/","title":{"rendered":"Alineamiento global"},"content":{"rendered":"<p>La t\u00e9cnica b\u00e1sica para hacer un alineamiento de secuencias (tanto de ADN como de prote\u00ednas) es la <b>matriz de puntos<\/b>. Ello permite hacer un <b>alineamiento global<\/b> (a todo lo largo de las secuencias que se comparan).<\/p>\n<h2>Matriz de puntos<\/h2>\n<div class=\"entry-content clearfix\">\n<p><a href=\"http:\/\/bioinfo2.ugr.es\/bioinfo\/wp-content\/uploads\/2013\/06\/DotMatrix.jpg\" target=\"_blank\"><img loading=\"lazy\" class=\"alignnone size-medium wp-image-374\" src=\"http:\/\/bioinfo2.ugr.es\/bioinfo\/wp-content\/uploads\/2013\/06\/DotMatrix-300x206.jpg\" alt=\"DotMatrix\" width=\"300\" height=\"206\" srcset=\"https:\/\/bioinfo2.ugr.es\/genomica\/wp-content\/uploads\/2013\/06\/DotMatrix-300x206.jpg 300w, https:\/\/bioinfo2.ugr.es\/genomica\/wp-content\/uploads\/2013\/06\/DotMatrix.jpg 662w\" sizes=\"(max-width: 300px) 100vw, 300px\" \/><\/a><\/p>\n<ul>\n<li><a href=\"http:\/\/emboss.bioinformatics.nl\/cgi-bin\/emboss\/dottup\" target=\"_blank\">EMBOSS \u2013 dottup<\/a><\/li>\n<\/ul>\n<hr \/>\n<h2>Datos de ejemplo<\/h2>\n<div class=\"entry-content clearfix\">\n<div id=\"subnav\">\n<div>\n<ul>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/nuccore\/U23808\" target=\"_blank\">Xenopus rhodopsin gene<\/a><\/li>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/nuccore\/L07770\" target=\"_blank\">Xenopus rhodopsin mRNA<\/a><\/li>\n<li>Pseudogen de beta-actina:<\/li>\n<\/ul>\n<\/div>\n<div>\n<pre>Human beta-actin related pseudogene h-beta-ac-psi-2 5'end\r\nCTACAGTGAGCCGAGGTCATGCCATTGCACTCCAATCTGGGCGACAAGA\r\nGTGAAACTCCGTCAAAAGAAAGAAAGAAAGAGACAAAGAGAGTTAGAAA\r\nGAAAGAAAGAGAGAGAGAGAGAAAGGAAGGAAGGAAGAAAAAGAAAGAA\r\nAAAGAAAGAAAGAGAAAGAAAGAAAGAGAAAGAAAGAAAGAAAGAAAGA\r\nAAGAAAGAAAGAAAGAAAGAAAGAAAAAGAAAGAAAGAAAGAAAGAAAG\r\nAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAAGAAAG\r\nAGCAAGTTACTATAGCGGTAGGGGAGATGTTGTAGAAATATATATAAAC\r\nCTCCTTACACCGCGGAGACCGCGTCAGCCCAGCGAGCACAGAACCTTGT\r\nCCTTGCCGCTGCGCCTTGCGTCCGCACCCGCCGCCAGCTCACCATGGAT\r\nGATGCTATCACCGCGCTCGTCGTCGTCGACAACTGCTCCAGCATGCGCA\r\nAGGCTCCCCAGGCCGTCTTCCCCTCCATTGTGGGGCACCCTAGGCACCA\r\nGGGAGTGATGGTGGGCATGGGTCAGAAGGACTCCTATGTGGGCAAGGAG\r\nGCCCAGAGCAAGAGAGGCATCCTGACTCTGAAGTACCCCATCAAGCATG\r\nGCAACGTCACGAACTGGGACAACATGGAGAAGATCTGGCACCACACCTA\r\nCAACGAGGTGCGTGTGACTGCTGAGGAGCACCCCGTGCTGCTGACTGAG\r\nGCCCCCCTGAACCCCAAGCTCAACCATGAGAAGACGACCCAGTTCATCA\r\nTGTTTGAGACCTTCAACACCCCAGCCATGGATGTGGCCATCCAGGCCGT\r\nGCTGTCCCTGTATGCCTCTGGAGGTACCACTGGCATCGTGATGCACCCC\r\nGGTGACAGGGTCACCCACACTCTGTCCATCTAGGAGGGGTACGCCCTCC\r\nCCACGCCATCCTGCGTCTGGACCTGGCTGGCGGGGACCTGACTAACTAC\r\nCTCAAGAAGACCCTCACCCAGCACAGCTACAGCTTCACCACCACGCTGA\r\nGCAGGAAATCATGTGTGACATCAAGGAGAAGCTGTGCTACGTCGCCCTG\r\nGAATTCGAGCAGGAGATGGCCTCGGCGGCCTCCAGCTCCTCCCTGGAGA\r\nAGAGCTATGAGCTGCCAGATGACCAGGTCATCACCATCGACAATGAGCG\r\nGTTCCGCTGCCCCGAGGCACTCTTCCAGCCTTCCTTTCTGGGCATGGAA\r\nTCCTGTGGCATCCATGACACTACCTTCAACTCCATTATGAAGTGTGACG\r\nTGGACAACCACAAAGACCTGTACGCCAACACAGTGCTGTCTGGCGGCAC\r\nCAACATGTACCCTGGCATCACAGACAGGATGCAGAAGGAGATCACCACC\r\nCTGGCGCCCAGCACGATGAAGATCAAGATCATTGCTCCTCCCCAGTGCA\r\nAGCGCTCCGTGTGGATTGGCTACTCCATCCTGGCCTCCACGTCCACCTT\r\nCCAGCAGATGTGGATCAGCAAGCAGGAGTAGGACGAGTCCGGCCCCTCC\r\nATCGTCCACCACAAATGCTTCTAGGCTGACTGTGACTTAGTTGCATTAC\r\nACCCTTTCTTGACAAAACCTAACTTGCACAGAAAACACGATGAGATTGG\r\nCATGGCTTTATTTGTTTTTGTTTTTGTTTGTTTGTTTGTTTTGGCTTG<\/pre>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<hr \/>\n<h2>Alineamiento global<\/h2>\n<p>Mediante un alineamiento global las secuencias se alinean en su totalidad, de principio a fin. El algoritmo b\u00e1sico para ello es el de Needleman-Wunsch.<\/p>\n<div class=\"entry-content clearfix\">\n<ul>\n<li><a href=\"http:\/\/emboss.bioinformatics.nl\/cgi-bin\/emboss\/needle\" target=\"_blank\">EMBOSS \u2013 needle<\/a><\/li>\n<\/ul>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>La t\u00e9cnica b\u00e1sica para hacer un alineamiento de secuencias (tanto de ADN como de prote\u00ednas) es la matriz de puntos. Ello permite hacer un alineamiento global (a todo lo largo de las secuencias que se comparan). Matriz de puntos EMBOSS \u2013 dottup [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/bioinfo2.ugr.es\/genomica\/wp-json\/wp\/v2\/pages\/1965"}],"collection":[{"href":"https:\/\/bioinfo2.ugr.es\/genomica\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/bioinfo2.ugr.es\/genomica\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/bioinfo2.ugr.es\/genomica\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/bioinfo2.ugr.es\/genomica\/wp-json\/wp\/v2\/comments?post=1965"}],"version-history":[{"count":0,"href":"https:\/\/bioinfo2.ugr.es\/genomica\/wp-json\/wp\/v2\/pages\/1965\/revisions"}],"wp:attachment":[{"href":"https:\/\/bioinfo2.ugr.es\/genomica\/wp-json\/wp\/v2\/media?parent=1965"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}