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Computational Genomics and Bioinformatics |
Research teamJosé L. Oliver, Professor of Genetics |
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Software & Databases developed by our group |
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| Segmenting long-range correlated sequences | Segmentation of time series with long-range fractal correlations |
| DNAkeywords | Clustering of DNA words and biological function: a proof of principle Journal of Theoretical Biology 297: 127-136 [PDF] http://dx.doi.org/10.1016/j.jtbi.2011.12.024 |
| High-level organization of isochores into gigantic superstructures in the human genome Physical Review E 83: 031908 (1-7) http://dx.doi.org/10.1103/PhysRevE.83.031908 |
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Large-Scale DNA Patterns |
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WordCluster: detecting clusters of DNA words and genomic elements |
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NGSmethDB: A database for next-generation sequencing single-cytosine-resolution DNA methylation data Nucleic Acids Research 1–5, 2010 [NGSmethDB genome browser] [Data mining] http://dx.doi.org/10.1093/nar/gkq942 |
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Prediction of CpG-island function: CpG clustering vs. sliding-window methods CpGcluster: A distance-based algorithm for CpG-island detection |
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miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments |
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Level statistics of words: finding keywords in literary texts and symbolic sequences Physical Review E 79: 035102-4, 2009 http://dx.doi.org/10.1103/PhysRevE.79.035102 [TextKeywords database] |
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IsoFinder: computational prediction of isochores in genome sequences Nucleic Acids Research 32: W287-W292 http://dx.doi.org/10.1093/nar/gkh399 [Download IsoFinder] |
| Online Resource on Isochore Mapping | Oliver JL, Bernaola-Galván P, Carpena P, Román-Roldán R. 2001. Isochore chromosome maps of eukaryotic genomes. Gene 276: 47-56 [PDF] |
| Logo design: Tania Salazar | Updated: 27-Nov-2012 |